PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 361aa    MW: 39773.2 Da    PI: 7.7729
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-1857117257
                                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  evm.model.supercontig_7.12  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                                 89*****************99*************************************995 PP

2Wus_type_Homeobox112.32.5e-3656118264
           Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
  evm.model.supercontig_7.12  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                                 689**********************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-745116IPR009057Homeodomain-like
PROSITE profilePS5007110.51153118IPR001356Homeobox domain
SuperFamilySSF466893.46E-1253120IPR009057Homeodomain-like
SMARTSM003896.8E-955122IPR001356Homeobox domain
CDDcd000861.21E-856118No hitNo description
PfamPF000461.8E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNTH HQWQHDINPS SLISTGCHGP PYTSSVGGCD ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
HLHNSKQTSQ TSPSSSHKSS PKGNINKKIT TTSTSSSSNS SALSLNTPNF VDLSHNNSST  180
GTQQQTYFQP HTELLTEPFF FPPAGSGGSF TTQGFGYSEL LATNVVDEQP TAPVGPCTSL  240
LLSEIMNHGA SKKDNQEKMK VVQQPQLTYA VTVPSTVDQI QGVVESLSVG VDHQDRQHDA  300
GRSTVFINDV AFEVGTMPFN VKEAFGEDAV LINSSGQPLP TNEWGVTLHP LQHGAFYYLI  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025495.11e-153Homeobox-3, putative
SwissprotQ6X7J41e-100WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLA0A061GG541e-153A0A061GG54_THECC; Homeobox-3, putative
STRINGVIT_10s0003g00560.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72062640
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-63homeobox-3